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GDC data
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How to check the read length for all the TCGA data samples in GDC?
gdc
tcga
wes
gdc data
updated 6.0 years ago by
Sean Davis
21k • written 6.0 years ago by
Biologist
▴ 110
0
votes
0
replies
912
views
GDC RNA seq files (replicates?)
gdc data
TCGA
gdcdownload
5.3 years ago
coyoung
▴ 10
0
votes
0
replies
821
views
Error in GDCprepare of TCGAbioloinks
TCGAbioloinks
GDC data
6.2 years ago
lawarde.ankita1
▴ 30
0
votes
1
reply
2.7k
views
r: vector memory exhausted (limit reached?)
TCGAbiolinks
Methylation
GDC data
Data prepare
4.3 years ago
ph.shimaasherif
• 0
4 results • Page
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Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
Answer: Help with error using camera() in limma
by
James W. MacDonald
65k
The first step should be to read the help page, which says ``` Usage: ## Default S3 method: camera(y, index, design, cont…
Comment: Assist me in determining whether the analysis process using the limma package ha
by
James W. MacDonald
65k
The description of the analysis says there are 120 genes at a 1.5 fold change and a p<0.05. They don't mention any multiplicity correction.…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
When using `arrayWeights()`, you mean the variability within the same group, is that correct? I alway run `arrayWeights()` because I naive …
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Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
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